Plexora
Python APIProjects and samples

PROJECT_SPEC_KEYS

Every key a project may be defined with, in one place, so the Python API, the CLI and any --from spec.json all accept exactly the same vocabulary. A caller that knows this tuple knows the whole schema.

Generated from Plexora 0.0.55View source
from plexora import PROJECT_SPEC_KEYS
PROJECT_SPEC_KEYS = ('image', 'name', 'segmentation', 'data', 'table', 'subset', 'layer', 'log1p', 'cell_id', 'x', 'y', 'z', 'sample', 'celltype', 'markers', 'metadata', 'coordinates', 'single_image', 'row_number_ids', 'channel_names', 'image_type', 'copy', 'node', 'dataset', 'exist_ok', 'paths', 'answers')

create_project

Register one project and return its name.

project_from_spec

Register one project from a spec dict.

project_from_spec

Register one project from a spec dict.

Datasets

Group projects that belong together, such as a cohort or a TMA series.