register_spatialdata_datasource

from plexora import register_spatialdata_datasource

register_spatialdata_datasource(name, image, store, table, **kwargs)

A thin wrapper over plexora.register_anndata_datasource -- a SpatialData table is itself an AnnData, so every keyword that function accepts (coordinate_source, feature_source, subset_by, celltype_column, channel_names, copy, data_dir, segmentation_mode, image_type, ...) behaves exactly as it does there. Only the named table is read, never the whole store.

When to useCopy Anchor Link

Reach for this when the cell table already lives in a SpatialData store; it names store and table directly instead of the (features, table) pair register_anndata_datasource would otherwise need. For a plain .h5ad or a flat CSV, use plexora.register_anndata_datasource or plexora.register_datasource instead; plexora.create_project is the newer, progressive entry point for either.

ParametersCopy Anchor Link

ReturnsCopy Anchor Link

ExamplesCopy Anchor Link

import plexora

plexora.register_spatialdata_datasource(
    "tonsil", image="slide.ome.tif", store="cells.zarr",
    table="table",
)

RelatedCopy Anchor Link

GuidesCopy Anchor Link